Themes of Doctoral Theses | Faculty of Biomedical Engineering

Department of Biomedical Technology#kbt

Name	Tutor	Tutor-specialist
Optimisation of artificial lung ventilation during high frequency oscillatory ventilation	prof. Ing. Karel Roubík, Ph.D.	MUDr. Petr Waldauf, Ph.D.
Optimization of mechanical ventilation using electrical impedance tomography	prof. Ing. Karel Roubík, Ph.D.
Medical diagnostics based on EM field	prof. Dr.-Ing. Jan Vrba, M.Sc.	prof. Ing. David Vrba, Ph.D.
Applicators foe EM Thermotherapy	prof. Dr.-Ing. Jan Vrba, M.Sc.	prof. Ing. David Vrba, Ph.D.
Modeling and Mapping of Bioelectrical sources	doc. Ing. Milan Tyšler, CSc.	prof. Ing. Peter Kneppo, DrSc.
The biofunctionalization of the nanostructured surfaces in nanomedicine	Mgr. Zdeněk Remeš	Ing. Alexander Kromka, Ph.D. Ing. Júlia Mičová, Ph.D.
Optimization of oxygen therapy of extremely immature newborns	doc. Ing. Pertr Kudrna, Ph.D.	prof. MUDr. Richard Plavka, CSc.
Optimizing of the management of phototherapy for the treatment of neonatal hyperbilirubinemia	doc. Ing. Pertr Kudrna, Ph.D.	prof. MUDr. Richard Plavka, CSc.
Measurement and evaluation of Work of Breathing under extreme hypercapnica induced by ventilation insufficiency	Ing. Jakub Ráfl, Ph.D.	prof. Ing. Karel Roubík, Ph.D.
Optimization of automatic control of oxygenation in premature infants	Ing. Jakub Ráfl, Ph.D.	Thomas E. Bachamn, M.Sc.
Analysis of biological signals in evaluation of course of diagnostic and therapeutic process	doc. Ing. Martin Rožánek, Ph.D.
Personalized treatment planning for transcranial magnetic stimulation.	prof. Ing. David Vrba, Ph.D.	prof. Dr.-Ing. Jan Vrba, M.Sc.
Metamaterials in Medicine	prof. Ing. David Vrba, Ph.D.	prof. Dr.-Ing. Jan Vrba, M.Sc.
The role of monitoring regional tissue oxygenation in the diagnosis of immature newborns	doc. Ing. Petr Kudrna, Ph.D.
Methodology of providing optimal variant of technical suppor of general anesthesia	doc. MUDr. Jan Bruthans, Ph.D.
Optimization of 3D bioprinting on decellularized scaffolds for preparation of implantable cardiovascular replacements	doc. Ing. Roman Matějka, Ph.D.	Ing. Jana Matějková, Ph.D.
Concurrent EEG/fMRI measurement with data-driven prediction and aberrations in modulation network excitability.	doc. Ing. Marek Piorecký, Ph.D.	Ing. Václava Piorecká, Ph.D.
Optimization of whole body simulators	prof. Ing. Karel Roubík, Ph.D.	MUDr. Tomáš Tyll, Ph.D.
Increasing the therapeutic and diagnostic capabilities of devices for artificial lung ventilation	prof. Ing. Karel Roubík, Ph.D.	MUDr. Tomáš Tyll, Ph.D.
Mathematical modeling of parameters for managed entry agreements for health technologies	doc. Dr. rer. nat. Aleš Tichopád, Ph.D.
Quality indicators for health services covered by health insurance	doc. Dr. rer. nat. Aleš Tichopád, Ph.D.
Modelling the patient journey through the healthcare system	doc. Dr. rer. nat. Aleš Tichopád, Ph.D.
Optimization of microwave regional hyperthermia treatment	Ing. Tomáš Dřížďal, Ph.D.
Integration of physiological parameter information in neuropsychiatric research	Ing. Václav Piorecká, Ph.D.
Analysis of 12-lead ECG for the assessment of electrical heterogeneity in heart ventricles	Ing. Ksenia Sedova, Ph.D.	Peter van Dam, Ph.D.
Analysis of ventricular repolarization for prediction of arrhythmias	Ing. Ksenia Sedova, Ph.D.
Artificial intelligence methods in use for dynamic behaviour model creation of selected medical thermometers	prof. RNDr. Jiří Tesař, Ph.D.	Dr. Ing. Radek Strnad, Ph.D.
Advance metrology methods in the evaluation of medical devices with measuring function according to the MDR	prof. RNDr. Jiří Tesař, Ph.D.	prof. RNDr. MUDr. Jiří Beneš, CSc.
Modelling and optimisation of processes in perinatological care	doc. Ing. Petr Kudrna, Ph.D.
Optimization of artificial lung ventilation in neonatal patients based on electrical signals of the diaphragm	doc. Ing. Petr Kudrna, Ph.D.
Microwave radar technologies for diagnostic purposes in medicine	doc. Ing. Ondřej Fišer, Ph.D.
Clinical and health-economic consequences of suboptimal care in patients with chronic lung diseases	doc. Dr. rer. nat. Aleš Tichopád, Ph.D.	Ing. Gleb Donin, Ph.D.
Methods and models for adherence analysis	Ing. Jakub Ráfl, Ph.D.
Evaluating infectious disease screening and prevention programmes in the context of HTA: linking data analysis and social determinants in populations at risk in Central Europe	doc. Ing. Martin Rožánek, Ph.D.	Mgr. Ivana Šarkanová, Ph.D.
Possibilities of segmentation and evaluation of lung images from tomographic imaging modalities using machine learning methods	doc. Ing. Martin Rožánek, Ph.D.
Modeling Patterns of Healthcare Utilization and Clinical Trajectories Using Administrative Data	Ing. Gleb Donin, Ph.D.
Analysis of hidden risk in automated infusion therapy	prof. Ing. Karel Roubík, Ph.D.	Ing. Martin Mayer, Ph.D., MHA
Preparation and Functional Optimization of Soft Tissue and Cardiovascular Replacements for Regenerative Medicine	doc. Ing. Roman Matějka, Ph.D.	doc. Ing. Jana Matějková, Ph.D.
Changes in functional brain connectivity measured by magnetic resonance in the short-term and long-term horizon	doc. Ing. Jaroslav Tintěra CSc.	doc. MUDr. Oliver Profant, Ph.D., prof. Ing. Karel Roubík, Ph.D.
Pulsed Field Ablation and Electroporation in Biomedical Applications	doc. Ing. Ondřej Fišer, Ph.D.
Preparation of stimuli-responsive polymer nanomedicines using microfluidics nanoprecipitation – the in vitro and in vivo performance under simulated physiological conditions	prof. Mgr. Martin hrubý, Ph.D., DSc.	Mgr. Eliézer Jäger, Ph.D., Mgr. Alessandro Jäger, Ph.D., prof. Ing. Karel Roubík, Ph.D.

Department of Biomedical Informatics#kbi

Name	Tutor	Tutor-specialist
Modeling and analysis of human walking dynamics for the purpose of identifying and quantifying failures disrupting locomotion of patients	Ing. Jan Kauler, Ph.D.
Correlation of neuroimaging and neurophysiologic parameters in presymptomatic and manifested Parkinson’s disease	doc. Mgr. Radim Krupička, Ph.D.
Analysis of movement disorders for the studyof extrapyramidal diseases mechanisms	doc. Mgr. Radim Krupička, Ph.D.	prof. MUDr. Evžen Růžička, DrSc.
Biometric identification and authentication through keyboard and pointing devices in healthcare applications.	Ing. Anna Horňáková, Ph.D.
IT security solutions in healthcare facilities in accordance with legislative requirements	RNDr. Dagmar Brechlerová, Ph.D.
Instrumental assessment of the effect of intervention on gait in patients with neurological disorders	Mgr. Slávka Neťuková, Ph.D.	prof. MUDr. Evžen Růžička, DrSc.
Methods for detecting genetic aberrations in patients with chronic myeloid and acute lymphoblastic leukemias	Ing. Ondřej Klempíř, Ph.D.	RNDr. Jitka Koblihová, Ph.D.
Leveraging Genomic Foundation Models for the Analysis of Sequencing Data in Hematology	doc. Mgr. Radim Krupička, Ph.D.	doc. Mgr, Kateřina Machová Poláková, Ph.D.
DNA-assembled energy-transfer modules	doc. Ing. Vladimíra Petráková, Ph.D.
DNA-assembled quantum emitters for sensing and photonics	doc. Ing. Vladimíra Petráková, Ph.D.
Plasmonic magnification of molecule movement	doc. Ing. Vladimíra Petráková, Ph.D.
Gold nanoclusters as new molecular markers and sensors	doc. Ing. Vladimíra Petráková, Ph.D.	Zbigniew Zawada, Ph.D.
Methods for external evaluation of machine learning models in biomedical speech analysis	Ing. Ondřej Klempíř

Department of Natural Sciences#kpo

Name	Tutor	Tutor-specialist
Computational and experimental analysis of spinal and spinal elements characteristics	Ing. Martin Otáhal, Ph.D.	Ing. Petr Kuboví, FTVS UK Ing. Josef Šepitka, Ph.D., FS ČVUT
Advanced methods of long-term multi-channel signal processing in neurosciences	do. Ing. Lenka Lhotská, CSc.	MUDr. Martin Brunovský, Ph.D.
Application of virtual reality to rehabilitation	doc. Ing. Lenka Lhotská, CSc.	MUDr. Michaela Tomanová, Ph.D.
Application of virtual reality to keeping the elderly people active	doc. Ing. Lenka Lhotská, CSc.	doc. MUDr. Iva Holmerová, Ph.D.
Improving the properties of implants using doped biomaterials and hybrid deposition	doc. Ing. Petr Písařík, Ph.D.	Ing. Jan Mikšovský, Ph.D. Ing. Jan Remsa, Ph.D.
Combination of porous nano-diamond based electrochemical and electro- acoustic wave sensors	Dr. Vincent Mortet, Ph.D.
Experimental analysis of the physical response of cells to external stimuli	Ing. Martin Otáhal, Ph.D.	prof. Matěj Daniel, Ph.D.
Soft X-ray microscopy of biological cells	prof. Ing. Miroslava Vrbová, CSc.	Ing. Tomáš Parkman, Ph.D.
Fiber optic sensor for measuring the frequency of respiratory epithelium cilia	doc. Ing. Marie Pospíšilová
Study of emise spectra of native biofluorophores of cells with the aim of recognizing healthy and tumor cells of the realized fiber sensor	doc. Ing. Marie Pospíšilová
Intracranial Electrophysiological Biomarkers and Functional Network Characterization in Neurological Disorders	doc. Ing. Václav Křemen, Ph.D., EMBA

Department of Health Care Disciplines and Population Protection#kzooo

Name	Tutor	Tutor-specialist
Construction of biosensors for diagnostics of galectin-dependent cancers	prof. RNDr. Pavla Bojarová, Ph.D.
Efficacy of extracorporeal shockwave therapy in early stage of cubital tunnel syndrome	MUDr. Tomáš Nedělka, Ph.D.
Methods and systems for assessing the physical and mental condition of personnel during analog and space missions	Ing. et Ing. Hejda, Ph.D.	doc. Ing. Patrik Kutílek, Ph.D. pplk. MUDr. Markéta Hejsková
Construction of experimental biosensors for diagnostics of galectinsin complexmatrices such as blood serum	prof. RNDr. Pavla Bojarová, Ph.D.
Preparation, characterization and optimization of glyco-nanomaterials withtherapeutic potential	prof. RNDr. Pavla Bojarová, Ph.D.
Engineering of Defined Chitosan Biomaterials for Biomedicine	prof. RNDr. Pavla Bojarová, Ph.D.	Ing. Lucie Petrásková, Ph.D., Mgr. Jana Jarošová, Ph.D.
Quantum-classical methods for processing biomedical data and determining the physical and mental state	doc. Ing. Patrik Kutílek, Ph.D.	Ing. Petr Volf, Ph.D., mjr. Ing. Václav Křivánek, Ph.D.

Department of Information and Communication Technologies in Medicine#kit

Name	Tutor	Tutor-specialist